repeatmasker-recon
finds repeat families from biological sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
repeatmasker-reconMSPCollectedgeredefeledefeleredeffamdefimagespread
About repeatmasker-recon
From Debian's package description
The RECON package implements a de novo algorithm for the identification of repeat families from biological sequences.
The program implements an approach for the de novo identification and classification of repeat sequence families that is based on extensions to the usual approach of single linkage clustering of local pairwise alignments between genomic sequences. The extensions use multiple alignment information to define the boundaries of individual copies of the repeats and to distinguish homologous but distinct repeat element families. When tested on the human genome, this approach was able to properly identify and group known transposable elements. The program, should be useful for first-pass automatic classification of repeats in newly sequenced genomes.
From Debian's description of the repeatmasker-recon package, under that package's license.
Dependencies
Depends on
libc6perl
Related apps
- ismrmrd-toolscommand-line tools for ISMRMRDCommand line
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- fasta3tools for searching collections of biological sequencesCommand line
- last-aligngenome-scale comparison of biological sequencesCommand line
- seqan-appsC++ library for the analysis of biological sequencesCommand line
- bioawkextension of awk for biological sequence analysisCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the repeatmasker-recon package, under that package's license.
- Description: Debian's description of the repeatmasker-recon package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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