rtax
Classification of sequence reads of 16S ribosomal RNA gene
Command lineScience
Not tested on a device yet. What that means
Commands in the package
rtax
About rtax
From Debian's package description
Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm.
From Debian's description of the rtax package, under that package's license.
Dependencies
Depends on
Related apps
- snaplocation of genes from DNA sequence with hidden markov modelCommand line
- ncbi-blast+next generation suite of BLAST sequence search toolsCommand line
- ncbi-entrez-directNCBI Entrez utilities on the command lineCommand line
- probconsPROBabilistic CONSistency-based multiple sequence alignmentCommand line
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- rsemRNA-Seq by Expectation-MaximizationCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the rtax package, under that package's license.
- Description: Debian's description of the rtax package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.