snpomatic
fast, stringent short-read mapping software
Command lineScience
Not tested on a device yet. What that means
Commands in the package
findknownsnps
About snpomatic
From Debian's package description
High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments.
SNP-o-matic is a fast, stringent short-read mapping software. It supports a multitude of output types and formats, for uses in filtering reads, alignments, sequence-based genotyping calls, assisted reassembly of contigs etc.
From Debian's description of the snpomatic package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6
Related apps
- bowtie2ultrafast memory-efficient short read alignerCommand line
- bowtieUltrafast memory-efficient short read alignerCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- macsModel-based Analysis of ChIP-Seq on short reads sequencersCommand line
- velvetNucleic acid sequence assembler for very short readsCommand line
- idbaiterative De Bruijn Graph short read assemblersCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the snpomatic package, under that package's license.
- Description: Debian's description of the snpomatic package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.