sspace
scaffolding pre-assembled contigs after extension
Command lineScience
Not tested on a device yet. What that means
Commands in the package
sspace
About sspace
From Debian's package description
SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension (SSPACE) is a script able to extend and scaffold pre-assembled contigs using one or more mate pairs or paired-end libraries, or even a combination.
SSPACE is built based on SSAKE. Code of SSAKE is changed to be able to extend and scaffold pre-assembled contigs for multiple paired reads libraries.
This is the free 'basic' version of SSPACE. The non-free 'standard' version is available directly from Baseclear.
From Debian's description of the sspace package, under that package's license.
Dependencies
Depends on
Related apps
- cat-battaxonomic classification of contigs and metagenome-assembled genomes (MAGs)Command line
- surankcoSupervised Ranking of Contigs in de novo AssembliesCommand line
- idba-extraiterative De Bruijn Graph short read assemblers (extra tools)Command line
- autogridpre-calculate binding of ligands to their receptorCommand line
- seqan-raptorpre-filter for querying very large collections of nucleotide sequencesCommand line
- seqan-needlepre-filter for the counting of very large collections of nucleotide sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the sspace package, under that package's license.
- Description: Debian's description of the sspace package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.