abyss
de novo, parallel, sequence assembler for short reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
DistanceEstabyss-fixmateabyss-pe
About abyss
From Debian's package description
ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.
From Debian's description of the abyss package, under that package's license.
Dependencies
Depends on
makelibc6libgcc-s1libgomp1libopenmpi40libsqlite3-0libstdc++6perlbsdextrautilsopenmpi-commonopenmpi-bin
Related apps
- snaplocation of genes from DNA sequence with hidden markov modelCommand line
- bowtie2ultrafast memory-efficient short read alignerCommand line
- bowtieUltrafast memory-efficient short read alignerCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- macsModel-based Analysis of ChIP-Seq on short reads sequencersCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the abyss package, under that package's license.
- Description: Debian's description of the abyss package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.