gasic
genome abundance similarity correction
Command lineScience
Not tested on a device yet. What that means
Commands in the package
correct_abundancescreate_matrixquality_checkrun_mappers
About gasic
From Debian's package description
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.
From Debian's description of the gasic package, under that package's license.
Dependencies
Depends on
python3python3-scipypython3-numpypython3-biopythonpython3-pysampython3-matplotlibbowtiebowtie2bwaseqan-apps
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the gasic package, under that package's license.
- Description: Debian's description of the gasic package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.