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genomethreader

software tool to compute gene structure predictions

Command lineScience

Install

Not tested on a device yet. What that means

Commands in the package

  • align_dna
  • gth
  • gthbssmbuild
  • gthbssmfileinfo
  • gthbssmprint
  • gthbssmrmsd
  • gthbssmtrain
  • gthconsensus
  • gthfilestat
  • gthgetseq
  • gthmkbssmfiles
  • gthsplit

About genomethreader

From Debian's package description

GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. GenomeThreader was motivated by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used for plant genome annotation.

From Debian's description of the genomethreader package, under that package's license.

Dependencies

Depends on

  • libc6
  • libexpat1
  • libgenometools0t64
  • liblua5.1-0
  • zlib1g

Related apps

All Linux science apps

Sources and licenses

  • Name: the Debian package name.
  • Summary: Debian's short description of the genomethreader package, under that package's license.
  • Description: Debian's description of the genomethreader package, under that package's license.
  • Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
  • Popularity: Debian Popularity Contest counts.

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