prokka
rapid annotation of prokaryotic genomes
Command lineScience
Not tested on a device yet. What that means
Commands in the package
prokkaprokka-biocyc_to_fasta_dbprokka-cdd_to_hmmprokka-clusters_to_hmmprokka-genbank_to_fasta_dbprokka-genpept_to_fasta_dbprokka-hamap_to_hmmprokka-uniprot_to_fasta_db
About prokka
From Debian's package description
A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.
From Debian's description of the prokka package, under that package's license.
Dependencies
Depends on
perlparallellibbio-perl-perlncbi-blast+hmmeraragornprodigalncbi-tools-bininfernallibswiss-perllibxml-simple-perldefault-jrelesslibbio-searchio-hmmer-perl
Related apps
ASE GUIAtomic Simulation Environment GUI- hhsuitesensitive protein sequence searching based on HMM-HMM alignmentCommand line
- phastphylogenetic analysis with space/time modelsCommand line
- roaryhigh speed stand alone pan genome pipelineCommand line
- last-aligngenome-scale comparison of biological sequencesCommand line
artArtemis genome browser and annotation tool
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the prokka package, under that package's license.
- Description: Debian's description of the prokka package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.