scrappie
basecaller for Nanopore sequencer
Command lineScience
Not tested on a device yet. What that means
Commands in the package
scrappie
About scrappie
From Debian's package description
The Nanopore is a device for DNA/RNA sequencing that does not require an amplification of the material. The polynucleotides are threaded through a pore and while these pass through, the change in the electrostatic potential allows one to identify ("call") the actual base that resides in the pore. Scrappie goes a step further and also attempts to describe modifications to the nucleic acid.
From Debian's description of the scrappie package, under that package's license.
Dependencies
Depends on
libblas3orlibblas.so.3libc6libgomp1libhdf5-310
Related apps
- macsModel-based Analysis of ChIP-Seq on short reads sequencersCommand line
- ont-fast5-apisimple interface to HDF5 files of the Oxford Nanopore .fast5 file formatCommand line
- qcatdemultiplexing Oxford Nanopore reads from FASTQ filesCommand line
- poretoolstoolkit for nanopore nucleotide sequencing dataCommand line
- yanagibafilter low quality Oxford Nanopore reads basecalled with AlbacoreCommand line
- nanopolishconsensus caller for nanopore sequencing dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the scrappie package, under that package's license.
- Description: Debian's description of the scrappie package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.