Commands in the package
SibeliaC-Sibelia.py
About sibelia
From Debian's package description
Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms.
Sibelia is useful in finding:
1) shared regions, 2) regions that present in one group of genomes but not in others, 3) rearrangements that transform one genome to other genomes.
From Debian's description of the sibelia package, under that package's license.
Dependencies
Depends on
Related apps
- simkacomparative metagenomics method dedicated to NGS datasetsCommand line
- simkaminapproximate comparative metagenomics method dedicated to NGS datasetsCommand line
- bedtoolssuite of utilities for comparing genomic featuresCommand line
- bcftoolsgenomic variant calling and manipulation of VCF/BCF filesCommand line
- FastQC quality controlquality control for high throughput sequence data
igvdesktop genome vizualisation tool
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the sibelia package, under that package's license.
- Description: Debian's description of the sibelia package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.