xpore
Nanopore analysis of differential RNA modifications
Command lineScience
Not tested on a device yet. What that means
Commands in the package
xpore
About xpore
From Debian's package description
RNA is transcribed from DNA, possibly spliced and exported to the cytoplasm - fine - but its bases can also be modified, edited, and not all such modifications are visible by Sanger sequencing methods and its derivatives.
The Nanopore measures potentials, and if the bases have a different shape then this is measured - not necessarily in an interpretable manner, something must be left for mass spectrometry, but one may be pointed to a difference. And maybe one can even statistically associate such differences with a molecular or clinical phenotype.
From Debian's description of the xpore package, under that package's license.
Dependencies
Depends on
Related apps
- surpyvormodification of VCF files with SURVIVORCommand line
- phyutilitysimple analyses or modifications on both phylogenetic trees and data matricesCommand line
- kineticstoolsdetection of DNA modificationsCommand line
- scrappiebasecaller for Nanopore sequencerCommand line
- ont-fast5-apisimple interface to HDF5 files of the Oxford Nanopore .fast5 file formatCommand line
- qcatdemultiplexing Oxford Nanopore reads from FASTQ filesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the xpore package, under that package's license.
- Description: Debian's description of the xpore package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.