assemblytics
detect and analyze structural variants from a genome assembly
Command lineScience
Not tested on a device yet. What that means
Commands in the package
Assemblytics
About assemblytics
From Debian's package description
Assemblytics incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species.
From Debian's description of the assemblytics package, under that package's license.
Dependencies
Depends on
perlpython3python3-numpyr-base-corer-cran-ggplot2r-cran-plyrr-cran-rcolorbrewer
Recommends
Related apps
- cnvkitCopy number variant detection from targeted DNA sequencingCommand line
- svimStructural variant caller for long sequencing readsCommand line
- atacgenome assembly-to-assembly comparisonCommand line
- dellyStructural variant discovery by read analysisCommand line
- tidditstructural variant callingCommand line
- lumpy-svgeneral probabilistic framework for structural variant discoveryCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the assemblytics package, under that package's license.
- Description: Debian's description of the assemblytics package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.