nanosv
structural variant caller for nanopore data
Command lineScience
Not tested on a device yet. What that means
Commands in the package
NanoSV
About nanosv
From Debian's package description
NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers. NanoSV has been extensively tested using Oxford Nanopore MinION sequencing data.
From Debian's description of the nanosv package, under that package's license.
Dependencies
Depends on
python3-pysampython3-vcfpython3
Recommends
Related apps
- svimStructural variant caller for long sequencing readsCommand line
- poretoolstoolkit for nanopore nucleotide sequencing dataCommand line
- vttoolset for short variant discovery in genetic sequence dataCommand line
- dellyStructural variant discovery by read analysisCommand line
- genometestertoolkit for performing set operations on k-mer listsCommand line
- nanopolishconsensus caller for nanopore sequencing dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the nanosv package, under that package's license.
- Description: Debian's description of the nanosv package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.