miniasm
ultrafast de novo assembler for long noisy DNA sequencing reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
miniasm
About miniasm
From Debian's package description
Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
From Debian's description of the miniasm package, under that package's license.
Dependencies
Depends on
libc6zlib1g
Recommends
Related apps
- bowtie2ultrafast memory-efficient short read alignerCommand line
- bowtieUltrafast memory-efficient short read alignerCommand line
- seqkitcross-platform and ultrafast toolkit for FASTA/Q file manipulationCommand line
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- staden-io-lib-utilsprograms for manipulating DNA sequencing filesCommand line
- dascrubberalignment-based scrubbing pipeline for DNA sequencing readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the miniasm package, under that package's license.
- Description: Debian's description of the miniasm package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.